Why Did Peter Sink?
Why Did Peter Sink?
Reading the Bible through the lens of: Protein Folding
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Reading the Bible through the lens of: Protein Folding

From Primary to Quaternary Structure: How things develop

For science-minded people, I think a good way to think of salvation history in the Bible is to consider it in the light of protein folding, where the same protein in “primary structure” is very different than that of “quaternary structure.” The same protein becomes something completely different in each stage, and until the “fullness of time” arrives for the Incarnation through Mary, the protein has not reached its highest state. Until a protein folds into a certain shape, it cannot perform its full function. This is a marvelous thing to study in science, and I have a hard time believing that people don’t recognize the genius of God in this amazingly simple yet incredibly complex topic of protein folding. But then I can look at a blade of grass and see the wonder and awe of God in it, so maybe I’m strange. But it is truly mind-blowing that the same peptide chains can be configured into different shapes that have wildly different purposes and usages. This same unfolding and folding happens in individual lives. If you ever have the joy of watching someone in addiction come to believe and receive new life, this can happen before your eyes instead of over thousands of years.

The “fullness of time”, in terms of protein folding and covenants in salvation history (Pic from Khan Academy)

I realize this is quite a leap from reading the Bible in the light of professional wrestling, but protein folding may help us see that the world of Adam and Cain is different from that of Noah, and that of Abraham, and that of Moses, and that of Jesus. Each covenant is a “fold” toward the “fullness of time” that Jesus speaks of when he arrives.

I once heard a person describe his awakening from addiction this way: throughout his life, he felt as if he was holding a piece of construction paper in front of his face, and was never able to see much. Somewhere on this sheet of construction paper were two eye holes, and now and then, he would shift the paper so that the eye holes lined up with his eyes for a bit. And he could see.

Once he began to pray and work toward a relationship with God, he could see more often, and now he can see because he is in the right position. But really, he says that his sight was positioned for him. Something higher shifted him and the paper to allow the light. This is similar to how this protein folding metaphor works. The same chemical compound is present, but to become useful in a new way, a shift must happen. Although it is the same protein, it is not the same shape after the folding, and can suddenly do new things. It’s the equivalent of a caterpillar turning into a butterfly. Once we are turned into the right shape we unlock the next phase, or level-up, as gamers would say.

We can see this folding and changing in the sacred texts. If Adam is the primary structure of a protein, Moses seems to be a quaternary structure in this metaphor. He unlocks new meaning in salvation history. Both are men, but they reach new heights as salvation history unfolds. And Jesus is infinitely beyond Moses because it is he, God incarnate, who took on our human shape, but also made the atoms that form all proteins in the first place. He’s the second person of the three-in-one, the Trinity, who holds the gravitational constant in perfect position to allow such miracles of physics to happen repeatedly. Occasionally he even pokes his finger into the laws of nature to, say, walk on water or just walk with us in our trials, and we call these moments miracles.

In God’s plan, somehow the descendants of Cain helped lead to this fourth folding, and now we await the final folding when the marriage of heaven and earth happens. Of course, we don’t understand it fully because we are not God, we are like dogs looking at humans and pondering their behavior, or like me observing the goose on the exit ramp and wondering why there are cars. Goose, dog, me - none are God, but the two animals in that list are living more in alignment with God’s will than I am.

Somehow, someway, cities and weapons and family breakdown is all allowed in God’s plan. Geese getting hit on the exit ramp is part of the plan. Our history from Cain onward of scarring and ripping God’s plentiful earth is part of the plan. The Chosen people, the Israelites attacked and killed the giant clans as part of the plan. Then they themselves were slaughtered by the Assyrians and Babylonians as part of the plan. Caesar killed a few million people in the Gallic wars as part of God’s plan that preceded the fullness of time when Jesus arrived. Since the Resurrection, we’ve had ever larger wars and plagues and famines.

I can’t understand it all without the ideas of free will and redemptive suffering. I wish you luck if you are going to spend a life trying to reconcile suicide, addiction, murder, poverty, starvation, and rampant sexual sin without free will and a living God that allows us to sin out of love but yearns for us to return and repent like Prodigal Sons. It is quite clear that sin is the cause of all suffering. Yet a little voice is calling to us all, if we will pause to listen for it, and only when we do can we “fold” into the next phase, as a more spiritually mature structure, when we allow God to take control, and his will to be done for our lives. It is always the Cains of this world that create a living hell in trying to create heaven through power and increasing technology. It seems obvious at this point that the next serious famine will come when our machines stop working, or electricity fails, or we poison the water. Yet we look back at those who lived sustainably in the “Middle Ages” and “Dark Ages” as ignorant fools, even though they lived in harmony with nature and small communities, like the goose family on the exit ramp (from the prior post). We rush in our cars on massive highways and if we happen to run over the goose, we don’t even stop. As William Blake said in the Proverbs of Hell, “The cut worm forgives the plow,” and also, “The busy bee has no time for sorrow.” These are not compliments, but highways to hell, and we willingly choose those paths. We assume the march of progress will save us but like Lamech and Cain, the wise of this age will be made fools. St. Paul was aware of this, as his own wisdom revealed itself as foolish.

For the message of the cross is foolishness to those who are perishing, but to us who are being saved it is the power of God. For it is written:

“I will destroy the wisdom of the wise;
    the intelligence of the intelligent I will frustrate.”

Where is the wise person? Where is the teacher of the law? Where is the philosopher of this age? Has not God made foolish the wisdom of the world? For since in the wisdom of God the world through its wisdom did not know him, God was pleased through the foolishness of what was preached to save those who believe. (1 Cor 1:18-21)

Cain never folded past his primary structure, but in the Saints, you see the change, the shift, the turning, the folding - from primary to secondary to tertiary to quaternary. This is how and why people change once they fully see Christ as God himself. What seemed wise before becomes foolish once the light of faith alters the meaning of every moment and interaction because the base fear of death is removed completely, and when that happens the kingdom of God is already among us. It’s suddenly visible even amid the suffering.

This protein folding metaphor can work on a social level or personal because it seems that if we are stuck in sin, we have not leveled up from the primary structure. Or, if we have folded into an advanced structure, but then fall back we have gone through some “denaturing” process and need to surrender to God once again to level up. (And of course, in the spiritual life we level up by going down, like Dante going down into hell - by kneeling, we let go and let God fold us into the shape he wants, and prayer is the catalyst.)

As for the mark of Cain, which protects him, it’s disturbing to many that he is not killed. But the death penalty comes about when Noah’s covenant is announced, and again in the Mosaic law. The world is still in primary structure when Cain commits sin and allows it into the world. (Worth noting here is that in the book of Numbers, the Israelite law requires “cities of refuge” for accidental death (manslaughter) and wandering exiles, so God’s law shows mercy to those who haven’t committed murder out of malice.)

But Cain then wanders as an exile, lost, in psychological torture, turned away from God, it seems. Or perhaps he is saved? We cannot know, just as we cannot know who is saved or not, as the particular judgment of any person, besides the canonized saints, is known but to God alone.

So Cain’s descendants accomplish much, and seize power and wealth and pleasure. But there’s a problem with those pursuits. Power lives in perpetual fear of losing power. Wealth lives in perpetual fear of losing wealth. Pleasure lives in…ok you get the point.

We have a role to play in a much larger plan, and to play it properly our highest loyalty must be to Christ, not to a nation, not to a president, and not to an ideology. If you need a key to understanding the Old Testament, it is this: people sin, and things go badly, but it calls them to change, to fold into the next structure that leads them to their ultimate purpose. This is the password to unlocking the mysteries. Everyone sins. Everyone falls. But that is where the “folding” happens to allow us to fit into the puzzle of higher purpose. Abraham sins by taking two wives, and he even gives his wife Sarah to save his skin when he is fearful. He suffers for it. Moses sins, multiple times. He suffers for it. David sins so badly that even small children understand that his move to kill Uriah is an incredibly dirty mafia hit. For goodness sake, Samson…we’ll get to Samson later, in some other series.

When the folding happens to us, where life and experience and time and age re-shape us, we can either become static in an unending prideful pity party…or we can seek faith, hope, and charity. Even a protein like hemoglobin knows that when change happens, it works toward the purpose for which God created it, which is to carry oxygen to our cells. When it is disordered, you have sickle cell anemia and other maladies. And some proteins malfunction, just as some acorns never become oak trees. Such is God’s will. God’s way is beyond our pay grade of knowing, and even what we can know, we cannot fully understand. However, even a protein that malfunctions or an acorn that never germinates still is ready to attempt to live out its purpose. Even if deformed or broken, these “mindless” proteins and seeds know that to carry oxygen or to sprout a sapling is what they must do if the conditions are right. We are no different. Our primary structure is the joining of two cells, and then we fold into a process of mitosis in our mothers’ wombs, then we fold into the light, then we fold into childhood, fold into adolescence, fold into adulthood, parenthood, and old age. From the first cell all the way to the grave, we have the same soul. The protein in its folding does not change but becomes capable in different ways. We are made to be human, with a body and soul, and we are made by God and for God, thus our ultimate purpose is not to make money or win honor, it is to return to eternal life with God, who is the only being that can satisfy our souls. The hunger we have for meaning is the same as our cells for oxygen. Our bellies cry out for food, and we know food exists, so we eat. Our tongue notifies us that water is needed, and water exists. And our heart yearns to have a relationship with God, with a holy family, and it too exists. When all of these other hungers, thirsts, and yearnings have corresponding solutions, so does the greatest desire of all, which is to be loved and to seek supreme happiness, which can be had, in this life and the next.

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Why Did Peter Sink?
Why Did Peter Sink?
A story of fitness, recovery, and conversion.
It's not supposed to be cool.